Skip to contents

Changelog

Source: NEWS.md

Rogue v2.1.7 (2025-07-01)

CRAN release: 2025-07-01

  • Improve tip instability calculation in identical tree sets (#29).
  • Improve variable protection.

Rogue v2.1.6 (2023-11-29)

CRAN release: 2023-11-29

  • Legend annotations in documentation.
  • Disable parallel evaluation by default in TipInstability(), adding parallel parameter to allow user to override.
  • Use format string in REprintf().

Rogue v2.1.5 (2023-03-20)

CRAN release: 2023-03-20

  • Call C functions using symbols, not strings.

Rogue v2.1.4 (2023-01-16)

CRAN release: 2023-01-16

  • C2X compliant function prototypes.

  • Remove unused sprintf() calls.

Rogue v2.1.3 (2022-09-26)

CRAN release: 2022-09-26

  • ColByStability() gains pal argument to allow specification of custom palettes.

Rogue v2.1.2 (2022-08-16)

CRAN release: 2022-08-16

  • Faster rogue detection when edge lengths provided, per report by Joe Keating.

  • Don’t list neverDrop in QuickRogue(fullSeq = TRUE).

Rogue v2.1.1 (2022-07-20)

CRAN release: 2022-07-20

  • Handle ColByStability(trees = NULL).

Rogue v2.1.0 (2022-01-13)

CRAN release: 2022-01-13

  • Early termination of QuickRogue() when no further improvement possible.

  • Cophenetic() renamed to the more accurate GraphGeodesic().

  • Calculate information content of consensus trees with p > 0.5 (#15).

  • Improve support for multiPhylo objects.

  • New vignette detailing rogue detection with Bayesian tree samples.

Rogue v2.0.0 (2021-09-13)

CRAN release: 2021-09-13

  • Information theoretic rogue detection (per Smith, 2022).

Rogue v1.0.0 (2021-06-28)

CRAN release: 2021-07-01

  • R interface to RogueNaRok.