Changelog

Source: NEWS.md

Rogue v2.1.6

CRAN release: 2023-11-29

• Legend annotations in documentation.
• Disable parallel evaluation by default in TipInstability(), adding parallel parameter to allow user to override.
• Use format string in REprintf().

Rogue v2.1.5

CRAN release: 2023-03-20

• Call C functions using symbols, not strings.

Rogue v2.1.4

CRAN release: 2023-01-16

• C2X compliant function prototypes.

• Remove unused sprintf() calls.

Rogue v2.1.3

CRAN release: 2022-09-26

• ColByStability() gains pal argument to allow specification of custom palettes.

Rogue v2.1.2

CRAN release: 2022-08-16

• Faster rogue detection when edge lengths provided, per report by Joe Keating.

• Don’t list neverDrop in QuickRogue(fullSeq = TRUE).

Rogue v2.1.1

CRAN release: 2022-07-20

• Handle ColByStability(trees = NULL).

Rogue v2.1.0

CRAN release: 2022-01-13

• Early termination of QuickRogue() when no further improvement possible.

• Cophenetic() renamed to the more accurate GraphGeodesic().

• Calculate information content of consensus trees with p > 0.5 (#15).

• Improve support for multiPhylo objects.

• New vignette detailing rogue detection with Bayesian tree samples.

Rogue v2.0.0

CRAN release: 2021-09-13

• Information theoretic rogue detection (per Smith, 2022).

Rogue v1.0.0

CRAN release: 2021-07-01

• R interface to RogueNaRok.