All SPR trees
Arguments
- parent
Integer vector corresponding to the first column of the edge matrix of a tree of class
phylo, i.e.tree$edge[, 1].- child
Integer vector corresponding to the second column of the edge matrix of a tree of class
phylo, i.e.tree$edge[, 2].- nEdge
integer specifying the number of edges of a tree of class
phylo, i.e.dim(tree$edge)[1]- notDuplicateRoot
logical vector of length
nEdge, specifying for each edge whether it is the second edge leading to the root (in which case its breaking will be equivalent to breaking the other root edge... except insofar as it moves the position of the root.)- edgeToBreak
(optional) integer specifying the index of an edge to bisect/prune, generated randomly if not specified. Alternatively, set to
-1to return a complete list of all trees one step from the input tree.