Label nodes with jackknife support values

JackLabels(
tree,
jackTrees,
plot = TRUE,
col = NULL,
frame = "none",
pos = 2L,
...
)

## Arguments

tree

A tree of class phylo.

jackTrees

A list or multiPhylo object containing trees generated by Jackknife().

plot

Logical specifying whether to plot results; if FALSE, returns blank labels for nodes near the root that do not correspond to a unique split.

Parameters to pass to nodelabels().
A named vector specifying the proportion of jackknife trees consistent with each node in tree, as plotted. If plot = FALSE, blank entries are included corresponding to nodes that do not require labelling; the return value is in the value required by phylo$node.label. ## See also Jackknife(): Generate trees by jackknife resampling Other split support functions: Jackknife(), MaximizeParsimony(), SiteConcordance ## Author ## Examples library('TreeTools', quietly = TRUE) # for as.phylo # jackTrees will usually be generated with Jackknife(), but for simplicity: jackTrees <- as.phylo(1:100, 8) tree <- as.phylo(0, 8) JackLabels(tree, jackTrees) #> 11 12 13 14 15 #> 0.13 0.08 0.14 1.00 1.00 tree$node.label <- JackLabels(tree, jackTrees, plot = FALSE)