A list of class multiPhylo
containing phylogenetic trees:
ref_tree
A reference tree, bearing tips labelled 1 to 11.
move_one_near
Tip 1 has been moved a short distance.
move_one_mid
Tip 1 has been moved further.
move_one_far
Tip 1 has been moved further still.
move_two_near
Tips 10 & 11 have been moved a short distance.
move_two_mid
Tips 10 & 11 have been moved further.
move_two_far
Tips 10 & 11 have been moved further still.
collapse_one
One node has been collapsed into a polytomy.
collapse_some
Several nodes have been collapsed.
m1mid_col1
Tree
move_one_mid
with one node collapsed.m1mid_colsome
Tree
move_one_mid
with several nodes collapsed.m2mid_col1
Tree
move_two_mid
with one node collapsed.m2mid_colsome
Tree
move_two_mid
with several nodes collapsed.opposite_tree
A tree that shares fewer quartets with
ref_tree
than expected by chance.caterpillar
A pectinate "caterpillar" tree.
top_and_tail
Tree
caterpillar
, with its outermost taxa swapped such that it shares no partitions withcaterpillar
.anti_pectinate
A random tree that shares no partitions with
caterpillar
.random_tree
A random tree.