Morphy object from single character

Morphy object from single character

Usage

SingleCharMorphy(char, gap = "inapp")

Arguments

char

State of each character at each tip in turn, in a format that will be converted to a character string by paste0(char, ";", collapse="").

gap

An unambiguous abbreviation of inapplicable, ambiguous (= missing), or extra state, specifying how gaps will be handled.

Value

A pointer to an object of class morphyObj. Don't forget to unload it when you've finished with it.

See also

Score a tree: MorphyTreeLength()

Other Morphy API functions: GapHandler(), MorphyErrorCheck(), MorphyWeights(), PhyDat2Morphy(), UnloadMorphy(), is.morphyPtr(), mpl_apply_tipdata(), mpl_attach_rawdata(), mpl_attach_symbols(), mpl_delete_Morphy(), mpl_first_down_recon(), mpl_first_up_recon(), mpl_get_charac_weight(), mpl_get_gaphandl(), mpl_get_num_charac(), mpl_get_num_internal_nodes(), mpl_get_numtaxa(), mpl_get_symbols(), mpl_init_Morphy(), mpl_new_Morphy(), mpl_second_down_recon(), mpl_second_up_recon(), mpl_set_charac_weight(), mpl_set_num_internal_nodes(), mpl_set_parsim_t(), mpl_translate_error(), mpl_update_lower_root(), mpl_update_tip(), summary.morphyPtr()

Author

Martin R. Smith (martin.smith@durham.ac.uk)

Examples

morphyObj <- SingleCharMorphy("-0-0", gap = "Extra")
RandomTreeScore(morphyObj)
#> [1] 2
morphyObj <- UnloadMorphy(morphyObj)