Morphy object from single character
SingleCharMorphy(char, gap = "inapp")State of each character at each tip in turn, in a format that will be converted
to a character string by paste0(char, ";", collapse="").
An unambiguous abbreviation of inapplicable, ambiguous
(= missing), or extra state, specifying how gaps will be handled.
A pointer to an object of class morphyObj.
Don't forget to unload it when you've finished with it.
Score a tree: MorphyTreeLength()
Other Morphy API functions:
GapHandler(),
MorphyErrorCheck(),
MorphyWeights(),
PhyDat2Morphy(),
UnloadMorphy(),
is.morphyPtr(),
mpl_apply_tipdata(),
mpl_attach_rawdata(),
mpl_attach_symbols(),
mpl_delete_Morphy(),
mpl_delete_rawdata(),
mpl_first_down_recon(),
mpl_first_up_recon(),
mpl_get_charac_weight(),
mpl_get_gaphandl(),
mpl_get_num_charac(),
mpl_get_num_internal_nodes(),
mpl_get_numtaxa(),
mpl_get_symbols(),
mpl_init_Morphy(),
mpl_new_Morphy(),
mpl_second_down_recon(),
mpl_second_up_recon(),
mpl_set_charac_weight(),
mpl_set_num_internal_nodes(),
mpl_set_parsim_t(),
mpl_translate_error(),
mpl_update_lower_root(),
mpl_update_tip(),
summary.morphyPtr()
morphyObj <- SingleCharMorphy("-0-0", gap = "Extra")
RandomTreeScore(morphyObj)
#> [1] 2
morphyObj <- UnloadMorphy(morphyObj)