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Sets a character's parsimony function type

Source: R/mpl_morphyex.R
mpl_set_parsim_t.Rd

Set the parsimony function type to one defined in the morphydefs.h header file. Setting the character to type NONE_T will also cause it to be excluded from any further calculations.

Usage

mpl_set_parsim_t(char_id, tname = "typename", morphyobj)

Arguments

char_id

The number of the character (transformation series) as defined in the input matrix. The first character is numbered 1 (one).

tname

The parsimony function type as defined in morphydefs.h

morphyobj

An instance of the Morphy object.

Value

A Morphy error code.

See also

Other Morphy API functions: GapHandler(), MorphyErrorCheck(), MorphyWeights(), PhyDat2Morphy(), SingleCharMorphy(), UnloadMorphy(), is.morphyPtr(), mpl_apply_tipdata(), mpl_attach_rawdata(), mpl_attach_symbols(), mpl_delete_Morphy(), mpl_delete_rawdata(), mpl_first_down_recon(), mpl_first_up_recon(), mpl_get_charac_weight(), mpl_get_gaphandl(), mpl_get_num_charac(), mpl_get_num_internal_nodes(), mpl_get_numtaxa(), mpl_get_symbols(), mpl_init_Morphy(), mpl_new_Morphy(), mpl_second_down_recon(), mpl_second_up_recon(), mpl_set_charac_weight(), mpl_set_num_internal_nodes(), mpl_translate_error(), mpl_update_lower_root(), mpl_update_tip(), summary.morphyPtr()

Author

Martin Brazeau