Identify and remove trivial splits

TrivialSplits() identifies trivial splits (which separate one or zero leaves from all others); WithoutTrivialSplits() removes them from a Splits object.

Usage

TrivialSplits(splits, nTip = attr(splits, "nTip"))

WithoutTrivialSplits(splits, nTip = attr(splits, "nTip"))

Arguments

splits

An object of class Splits.

nTip

Integer specifying number of tips (leaves).

Value

TrivialSplits() returns a logical vector specifying whether each split in splits is trivial, i.e. includes or excludes only a single tip or no tips at all.

WithoutTrivialSplits() returns a Splits object with trivial splits removed.

See also

Other split manipulation functions: DropTip(), Subsplit()

Author

Martin R. Smith (martin.smith@durham.ac.uk)

Examples

splits <- as.Splits(PectinateTree(letters[1:9]))
efgh <- Subsplit(splits, tips = letters[5:8], keepAll = TRUE)
summary(efgh)
#> 4 bipartition splits (3 trivial) dividing 4 tips, e .. h
#>      1234
#>  12  ****
#>  15  .***
#>  16  ..**
#>  17  ...*
#> 
#>  Tip 1: e	 Tip 2: f	 Tip 3: g	 Tip 4: h	

TrivialSplits(efgh)
#>    12    15    16    17 
#>  TRUE  TRUE FALSE  TRUE 
summary(WithoutTrivialSplits(efgh))
#> 1 bipartition split dividing 4 tips, e .. h
#>      1234
#>  16  ..**
#> 
#>  Tip 1: e	 Tip 2: f	 Tip 3: g	 Tip 4: h