Reports whether splits are present or contradicted in a set of reference splits.
CompareSplits(splits, splits2) CompareBipartitions(splits, splits2)
An object that can be coerced into class
Splits against which to compare
A named vector of eight integers, listing the number of unique splits that:
N exist in total; i.e. the number of splits in
splits1 plus the
equivalent to 2 s + d1 + d2 + r1 + r2;
P1 occur in
P2 occur in
s occur in both
d1 occur in
splits1 but are contradicted by
d2 occur in
splits2 but are contradicted by
r1 occur in
splits1 only, being neither present in nor contradicted by
r2 occur in
splits2 only, being neither present in nor contradicted by
RF occur in one tree only; i.e. d1 + d2 + r1 + r2, the Robinson-Foulds distance.
Estabrook GF, McMorris FR, Meacham CA (1985). “Comparison of undirected phylogenetic trees based on subtrees of four evolutionary units.” Systematic Zoology, 34(2), 193--200. doi:10.2307/2413326 .
Robinson DF, Foulds LR (1981). “Comparison of phylogenetic trees.” Mathematical Biosciences, 53(1-2), 131--147. doi:10.1016/0025-5564(81)90043-2 .