AllQuartets()
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List all quartets |
CompareQuartets()
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Compare quartet states by explicit enumeration |
CompareQuartetsMulti()
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Compare one tree's quartets against others' |
CompareSplits() CompareBipartitions()
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Compare status of splits |
QuartetDistance() QuartetAgreement() PairsQuartetDistance() OneToManyQuartetAgreement() AllPairsQuartetDistance() AllPairsQuartetAgreement() TripletDistance() PairsTripletDistance() AllPairsTripletDistance()
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Direct entry points to "tqDist" functions |
PlotQuartet()
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Plot quartet on tree topologies |
QuartetPoints() SplitPoints() BipartitionPoints()
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Plot tree differences on ternary plots |
QuartetState() QuartetStates()
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Quartet State(s) |
SharedQuartetStatus() QuartetStatus() ManyToManyQuartetAgreement() TwoListQuartetAgreement() SingleTreeQuartetAgreement()
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Status of quartets |
ResolvedQuartets() ResolvedTriplets()
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Count resolved quartets |
SimilarityMetrics() DoNotConflict() ExplicitlyAgree() StrictJointAssertions() SemiStrictJointAssertions() SymmetricDifference() RawSymmetricDifference() RobinsonFoulds() MarczewskiSteinhaus() SteelPenny() QuartetDivergence() SimilarityToReference()
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Tree similarity measures |
SplitStatus() SharedSplitStatus()
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Matching partitions |
SymmetricDifferenceLineEnds() SymmetricDifferenceLines()
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Plot contours of equal symmetric difference on a ternary plot |
TQDist() TQAE()
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Wrapper for tqDist |
VisualizeQuartets()
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Visualize quartet difference on trees, by split |
sq_trees
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Eighteen example trees |