Reference

All functions
AllDists()	All distances between a pair of trees
CompareAllTrees()	All distances between each pair of trees
PairwiseDistances()	Distances between each pair of trees
TreeDistCol()	Select colour from palette
tdAbbrevs tdPlotSequence tdMdAbbrevs tdBoxAbbrevs tdMethods tdCol TDFunctions TDPair	Method parameters
bullseyeTrees bullMoDiInferred bullMoDiScores bullseyeMorphInferred bullseyeMorphScores	Bullseye test results
distanceDistribution25 distanceDistribution50 pectinateDistances11	Distances between random pairs of trees
linTestOneResults linTestTwoResults linTestSPRResults	Evaluating tree distance metrics by cluster recovery
randomTreeDistances	Mean distances between random pairs of trees
randomTreePairs25 randomTreePairs50	Pairs of random trees
sevenTipDistances	Distances between unrooted seven-leaf trees
shapeEffect	Shape effect
sprDistances	Tree distance and SPR moves