All functions

AllDists()

All distances between a pair of trees

CompareAllTrees()

All distances between each pair of trees

PairwiseDistances()

Distances between each pair of trees

TreeDistCol()

Select colour from palette

tdAbbrevs tdPlotSequence tdMdAbbrevs tdBoxAbbrevs tdMethods tdCol TDFunctions TDPair

Method parameters

bullseyeTrees bullMoDiInferred bullMoDiScores bullseyeMorphInferred bullseyeMorphScores

Bullseye test results

distanceDistribution25 distanceDistribution50 pectinateDistances11

Distances between random pairs of trees

linTestOneResults linTestTwoResults linTestSPRResults

Evaluating tree distance metrics by cluster recovery

randomTreeDistances

Mean distances between random pairs of trees

randomTreePairs25 randomTreePairs50

Pairs of random trees

sevenTipDistances

Distances between unrooted seven-leaf trees

shapeEffect

Shape effect

sprDistances

Tree distance and SPR moves