TipLabels() extracts labels from an object: for example, names of taxa in
a phylogenetic tree or data matrix. AllTipLabels() extracts all labels,
where entries of a list of trees may pertain to different taxa.
TipLabels(x, single = TRUE)
# S3 method for matrix
TipLabels(x, single = TRUE)
# S3 method for phylo
TipLabels(x, single = TRUE)
# S3 method for default
TipLabels(x, single = TRUE)
# S3 method for phyDat
TipLabels(x, single = TRUE)
# S3 method for MixedBase
TipLabels(x, single = TRUE)
# S3 method for TreeNumber
TipLabels(x, single = TRUE)
# S3 method for Splits
TipLabels(x, single = TRUE)
# S3 method for list
TipLabels(x, single = FALSE)
AllTipLabels(x)
# S3 method for list
AllTipLabels(x)
# S3 method for multiPhylo
AllTipLabels(x)
# S3 method for phylo
AllTipLabels(x)
# S3 method for Splits
AllTipLabels(x)
# S3 method for TreeNumber
AllTipLabels(x)
# S3 method for matrix
AllTipLabels(x)
# S3 method for multiPhylo
TipLabels(x, single = FALSE)
# S3 method for character
TipLabels(x, single = TRUE)
# S3 method for numeric
TipLabels(x, single = TRUE)
# S3 method for phyDat
TipLabels(x, single = TRUE)
# S3 method for default
TipLabels(x, single = TRUE)An object of a supported class (see Usage section above).
Logical specifying whether to report the labels for the first
object only (TRUE), or for each object in a list (FALSE).
TipLabels() returns a character vector listing the tip labels
appropriate to x. If x is a single integer, this will be a vector
t1, t2 ... tx, to match the default of ape::rtree().
Other tree properties:
ConsensusWithout(),
NSplits(),
NTip(),
PathLengths(),
SplitsInBinaryTree(),
TreeIsRooted()
Other Splits operations:
LabelSplits(),
NSplits(),
NTip(),
PolarizeSplits(),
SplitFrequency(),
SplitsInBinaryTree(),
Splits,
TipsInSplits(),
match.Splits,
xor()
TipLabels(BalancedTree(letters[5:1]))
#> [1] "e" "d" "c" "b" "a"
TipLabels(5)
#> [1] "t1" "t2" "t3" "t4" "t5"
data("Lobo")
head(TipLabels(Lobo.phy))
#> [1] "Tubiluchus_Priapulida" "Cricocosmia" "Aysheaia"
#> [4] "Siberion" "Onychodictyon_ferox" "Onychodictyon_gracilis"
AllTipLabels(c(BalancedTree(4), PectinateTree(8)))
#> [1] "t1" "t2" "t3" "t4" "t5" "t6" "t7" "t8"