RenumberTips(tree, tipOrder) sorts the tips of a phylogenetic tree tree such that the indices in tree$edge[, 2] correspond to the order of leaves given in tipOrder.

RenumberTips(tree, tipOrder)

# S3 method for phylo
RenumberTips(tree, tipOrder)

# S3 method for multiPhylo
RenumberTips(tree, tipOrder)

# S3 method for list
RenumberTips(tree, tipOrder)

# S3 method for `NULL`
RenumberTips(tree, tipOrder)

Arguments

tree

A tree of class phylo.

tipOrder

A character vector containing the values of tree$tip.label in the desired sort order, or an object (perhaps of class phylo or Splits) with tip labels.

Value

RenumberTips() returns tree, with the tips' internal representation numbered to match tipOrder.

Author

Martin R. Smith (martin.smith@durham.ac.uk)

Examples

data('Lobo') # Loads the phyDat object Lobo.phy
tree <- RandomTree(Lobo.phy)
tree <- RenumberTips(tree, names(Lobo.phy))