RenumberTips(tree, tipOrder) sorts the tips of a phylogenetic tree tree
such that the indices in tree[["edge"]][, 2] correspond to the order of
leaves given in tipOrder.
RenumberTips(tree, tipOrder)
# S3 method for phylo
RenumberTips(tree, tipOrder)
# S3 method for multiPhylo
RenumberTips(tree, tipOrder)
# S3 method for list
RenumberTips(tree, tipOrder)
# S3 method for `NULL`
RenumberTips(tree, tipOrder)A tree of class phylo.
A character vector containing the values of
tree[["tip.label"]] in the desired sort order, or an object
(perhaps of class phylo or Splits) with tip labels.
RenumberTips() returns tree, with the tips' internal
representation numbered to match tipOrder.
Other tree manipulation:
AddTip(),
CollapseNode(),
ConsensusWithout(),
DropTip(),
EnforceOutgroup(),
ImposeConstraint(),
KeptPaths(),
KeptVerts(),
LeafLabelInterchange(),
MakeTreeBinary(),
RenumberTree(),
Renumber(),
RootTree(),
SortTree(),
Subtree(),
TipTimedTree(),
TrivialTree
data("Lobo") # Loads the phyDat object Lobo.phy
tree <- RandomTree(Lobo.phy)
tree <- RenumberTips(tree, names(Lobo.phy))